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Compiling MobileNetSSD produce wrong results

I followed the instructions in this post to compile a MobileNetSSD fine tuned on my own dataset using NCSDK1. I can compile the model generated by merge_bn.py. However, the results are not good. This is what I tried:
- original merge_bn script, original deploy.prototxt: good results with cpu but mvNCCompile gives error (as expected)
- original merge_bn script, modified deploy.prototxt (without "_new" parts): bad results both with cpu and movidius
- modified merge_bn script (according to the mentioned post), original prototxt: error in merge_bn (as expected)
- modified merge_bn script, modified deploy_prototxt (as suggested by the post): bad results both with cpu and movidius.

Does anyone have some suggestion about how to fix this problem?

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